PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g028020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 424aa    MW: 47869.5 Da    PI: 8.8866
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g028020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-067193123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  Csa16g028020.1 71 YVCEICNQGFQRDQNLQMHRRRH 93
                    9*********************9 PP

2zf-C2H213.70.00018150171223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C+ C+k +  +s++k H++t+
  Csa16g028020.1 150 ICERCSKGYAVQSDYKAHLKTC 171
                     7*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.18E-56894No hitNo description
Gene3DG3DSA:3.30.160.601.7E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.977193IPR007087Zinc finger, C2H2
PfamPF128740.0217189No hitNo description
SMARTSM003550.00527193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355160113143IPR015880Zinc finger, C2H2-like
SMARTSM00355110149176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MIDYERSNNT KNLNNHHRRN PPPSSSSSDL LPDGNGAAVT QKRKRRPAGT PDPEAEVVSL  60
SPRTLLESDR YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KRETNEEVRK RVYVCPEPTC  120
LHHNPCHALG DLVGIKKHFR RKHSNHKQWI CERCSKGYAV QSDYKAHLKT CGTRGHSCDC  180
GRVFSRVESF IEHQDNCTVR RSQPSNHRLP QQQHTTNGTQ TTLTADKSEN ADLSIGPILP  240
GHPLQRRQSP PSDQQPSSLL YPFGSLCATN GSIELQLLPS RYSTNETSLS LSIGTLDQTT  300
MSEVERKSYE KGETSLEREE ARREVKRQIE IAELEFAEAK RIRQHARAEL HKAQLFREDA  360
SRRISATMML ITCHNCKQHF QTPAASVPPP SQPHCTDEST SLAVSYVSSA TTEGEKASDR  420
ASS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264780.0BT026478.1 Arabidopsis thaliana At1g68130 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470737.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
RefseqXP_010470738.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotQ9C9X70.0IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLD7KVR70.0D7KVR7_ARALL; Atidd14-domain 14
STRINGfgenesh2_kg.2__1036__AT1G68130.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.10.0indeterminate(ID)-domain 14